Detailed information of SNP:
|
SNP ID:
sf0127409727(Gbrowse)
Chromosome: chr01 Position: 27409727 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 70.88% | 29.12% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 491 | 26.68% | 73.32% |
| Aus | 65 | 44.62% | 55.38% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 25.15% | 74.85% |
| Tropical Japonica | 90 | 36.67% | 63.33% |
| Japonica Intermediate | 67 | 20.90% | 79.10% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127409727 | A->G | LOC_Os01g47890(LOC_Os01g47890.1) | INTRON |