Detailed information of SNP:
|
SNP ID:
sf0127413966(Gbrowse)
Chromosome: chr01 Position: 27413966 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 57.19% | 42.81% |
| All Indica | 785 | 95.92% | 4.08% |
| All Japonica | 495 | 0.40% | 99.60% |
| Aus | 61 | 18.03% | 81.97% |
| Indica I | 363 | 95.04% | 4.96% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 5 | 100.00% | 0.00% |
| Intermediate | 37 | 54.05% | 45.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127413966 | T->C | INTERGENIC | None |