Detailed information of SNP:
|
SNP ID:
sf0127427547(Gbrowse)
Chromosome: chr01 Position: 27427547 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1363 | 98.31% | 1.69% |
| All Indica | 747 | 97.05% | 2.95% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 353 | 98.87% | 1.13% |
| Indica II | 193 | 95.34% | 4.66% |
| Indica Intermediate | 201 | 95.52% | 4.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127427547 | G->A | INTERGENIC | None |