Detailed information of SNP:
SNP ID:
sf0127444521(Gbrowse)
Chromosome: chr01 Position: 27444521 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1323 | 96.98% | 3.02% |
All Indica | 713 | 96.63% | 3.37% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 60 | 75.00% | 25.00% |
Indica I | 333 | 97.60% | 2.40% |
Indica II | 190 | 97.37% | 2.63% |
Indica Intermediate | 190 | 94.21% | 5.79% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0127444521 | T->C | LOC_Os01g47960(LOC_Os01g47960.1) | Non-Synonymous SNP |