Detailed information of SNP:
|
SNP ID:
sf0127503839(Gbrowse)
Chromosome: chr01 Position: 27503839 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 59.94% | 40.06% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127503839 | G->A | LOC_Os01g48060(LOC_Os01g48060.1) | INTRON |
| sf0127503839 | G->A | LOC_Os01g48060(LOC_Os01g48060.2) | INTRON |
| sf0127503839 | G->A | LOC_Os01g48060(LOC_Os01g48060.3) | INTRON |