Detailed information of SNP:
|
SNP ID:
sf0127516702(Gbrowse)
Chromosome: chr01 Position: 27516702 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 97.98% | 2.02% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 477 | 95.60% | 4.40% |
| Aus | 53 | 98.11% | 1.89% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 316 | 94.62% | 5.38% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127516702 | C->T | INTERGENIC | None |