Detailed information of SNP:
|
SNP ID:
sf0127579538(Gbrowse)
Chromosome: chr01 Position: 27579538 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 96.66% | 3.34% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 459 | 90.85% | 9.15% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 321 | 100.00% | 0.00% |
| Tropical Japonica | 79 | 49.37% | 50.63% |
| Japonica Intermediate | 59 | 96.61% | 3.39% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127579538 | C->T | INTERGENIC | None |