Detailed information of SNP:
|
SNP ID:
sf0127689824(Gbrowse)
Chromosome: chr01 Position: 27689824 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 76.99% | 23.01% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 496 | 52.82% | 47.18% |
| Aus | 66 | 3.03% | 96.97% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 69.85% | 30.15% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127689824 | C->A | LOC_Os01g48320(LOC_Os01g48320.1) | Synonymous |