Detailed information of SNP:
|
SNP ID:
sf0127704387(Gbrowse)
Chromosome: chr01 Position: 27704387 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 59.35% | 40.65% |
| All Indica | 798 | 91.60% | 8.40% |
| All Japonica | 496 | 1.21% | 98.79% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 84.76% | 15.24% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 64.86% | 35.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127704387 | A->C | INTERGENIC | None |