Detailed information of SNP:
|
SNP ID:
sf0127775603(Gbrowse)
Chromosome: chr01 Position: 27775603 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 89.56% | 10.44% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 486 | 71.60% | 28.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 328 | 86.59% | 13.41% |
| Tropical Japonica | 92 | 21.74% | 78.26% |
| Japonica Intermediate | 66 | 66.67% | 33.33% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127775603 | G->C | INTERGENIC | None |