Detailed information of SNP:
|
SNP ID:
sf0127786113(Gbrowse)
Chromosome: chr01 Position: 27786113 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1373 | 95.70% | 4.30% |
| All Indica | 768 | 93.36% | 6.64% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 59 | 94.92% | 5.08% |
| Indica I | 356 | 93.54% | 6.46% |
| Indica II | 207 | 92.75% | 7.25% |
| Indica Intermediate | 205 | 93.66% | 6.34% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127786113 | C->T | INTERGENIC | None |