Detailed information of SNP:
|
SNP ID:
sf0127792135(Gbrowse)
Chromosome: chr01 Position: 27792135 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 92.11% | 7.89% |
| All Indica | 791 | 95.83% | 4.17% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 62 | 16.13% | 83.87% |
| Indica I | 367 | 91.55% | 8.45% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127792135 | G->A | LOC_Os01g48490(LOC_Os01g48490.1) | Non-Synonymous SNP |