Detailed information of SNP:
|
SNP ID:
sf0127792510(Gbrowse)
Chromosome: chr01 Position: 27792510 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 97.75% | 2.25% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 457 | 93.65% | 6.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 318 | 91.19% | 8.81% |
| Tropical Japonica | 79 | 100.00% | 0.00% |
| Japonica Intermediate | 60 | 98.33% | 1.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127792510 | A->T | LOC_Os01g48490(LOC_Os01g48490.1) | INTRON |