Detailed information of SNP:
|
SNP ID:
sf0127814143(Gbrowse)
Chromosome: chr01 Position: 27814143 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1374 | 59.68% | 40.32% |
| All Indica | 756 | 94.44% | 5.56% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 335 | 93.13% | 6.87% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 208 | 94.23% | 5.77% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127814143 | G->T | INTERGENIC | None |