Detailed information of SNP:
|
SNP ID:
sf0127819762(Gbrowse)
Chromosome: chr01 Position: 27819762 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 56.81% | 43.19% |
| All Indica | 761 | 24.57% | 75.43% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 357 | 30.25% | 69.75% |
| Indica II | 204 | 14.22% | 85.78% |
| Indica Intermediate | 200 | 25.00% | 75.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127819762 | C->T | LOC_Os01g48520(LOC_Os01g48520.1) | INTRON |