Detailed information of SNP:
|
SNP ID:
sf0127821564(Gbrowse)
Chromosome: chr01 Position: 27821564 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 97.14% | 2.86% |
| All Indica | 781 | 95.39% | 4.61% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 365 | 95.62% | 4.38% |
| Indica II | 211 | 95.73% | 4.27% |
| Indica Intermediate | 205 | 94.63% | 5.37% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127821564 | C->T | INTERGENIC | None |