Detailed information of SNP:
|
SNP ID:
sf0127822307(Gbrowse)
Chromosome: chr01 Position: 27822307 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1287 | 62.55% | 37.45% |
| All Indica | 669 | 30.34% | 69.66% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 307 | 34.53% | 65.47% |
| Indica II | 184 | 25.00% | 75.00% |
| Indica Intermediate | 178 | 28.65% | 71.35% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127822307 | A->C | INTERGENIC | None |