Detailed information of SNP:
|
SNP ID:
sf0127826923(Gbrowse)
Chromosome: chr01 Position: 27826923 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 85.06% | 14.94% |
| All Indica | 799 | 85.11% | 14.89% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 78.67% | 21.33% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127826923 | A->G | LOC_Os01g48525(LOC_Os01g48525.1) | UTR_3_PRIME |