Detailed information of SNP:
|
SNP ID:
sf0127830174(Gbrowse)
Chromosome: chr01 Position: 27830174 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 87.14% | 12.86% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 486 | 65.23% | 34.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 330 | 80.30% | 19.70% |
| Tropical Japonica | 90 | 23.33% | 76.67% |
| Japonica Intermediate | 66 | 46.97% | 53.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127830174 | A->G | INTERGENIC | None |