Detailed information of SNP:
|
SNP ID:
sf0127887072(Gbrowse)
Chromosome: chr01 Position: 27887072 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1151 | 72.98% | 27.02% |
| All Indica | 549 | 46.27% | 53.73% |
| All Japonica | 485 | 99.38% | 0.62% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 258 | 60.47% | 39.53% |
| Indica II | 147 | 21.09% | 78.91% |
| Indica Intermediate | 144 | 46.53% | 53.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 83 | 96.39% | 3.61% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127887072 | C->T | LOC_Os01g48650(LOC_Os01g48650.1) | Non-Synonymous SNP |