Detailed information of SNP:
|
SNP ID:
sf0127887117(Gbrowse)
Chromosome: chr01 Position: 27887117 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 96.20% | 3.80% |
| All Indica | 787 | 96.32% | 3.68% |
| All Japonica | 485 | 97.53% | 2.47% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 369 | 97.29% | 2.71% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 205 | 93.66% | 6.34% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 82 | 86.59% | 13.41% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127887117 | C->T | LOC_Os01g48650(LOC_Os01g48650.1) | Non-Synonymous SNP |