Detailed information of SNP:
|
SNP ID:
sf0127891785(Gbrowse)
Chromosome: chr01 Position: 27891785 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 63.93% | 36.07% |
| All Indica | 799 | 95.24% | 4.76% |
| All Japonica | 497 | 7.65% | 92.35% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 72.97% | 27.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127891785 | T->C | LOC_Os01g48650(LOC_Os01g48650.1) | INTRON |