Detailed information of SNP:
|
SNP ID:
sf0127892542(Gbrowse)
Chromosome: chr01 Position: 27892542 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 63.26% | 36.74% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 497 | 7.85% | 92.15% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0127892542 | G->A | LOC_Os01g48650(LOC_Os01g48650.1) | INTRON |