Detailed information of SNP:



SNP ID: sf0128083529(Gbrowse)

Chromosome: chr01

Position: 28083529
Major allele: A

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of C(minor allele)
All1416 65.68% 34.32%
All Indica799 99.50% 0.50%
All Japonica497 5.84% 94.16%
Aus67 98.51% 1.49%
Indica I375 100.00% 0.00%
Indica II213 98.59% 1.41%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica335 0.00% 100.00%
Tropical Japonica94 28.72% 71.28%
Japonica Intermediate68 2.94% 97.06%
Group VI/Aromatic14 92.86% 7.14%
Intermediate39 69.23% 30.77%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0128083529 C->A LOC_Os01g48940(LOC_Os01g48940.1) INTRON