Detailed information of SNP:
SNP ID:
sf0128083529(Gbrowse)
Chromosome: chr01 Position: 28083529 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1416 | 65.68% | 34.32% |
All Indica | 799 | 99.50% | 0.50% |
All Japonica | 497 | 5.84% | 94.16% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 98.59% | 1.41% |
Indica Intermediate | 211 | 99.53% | 0.47% |
Temperate Japonica | 335 | 0.00% | 100.00% |
Tropical Japonica | 94 | 28.72% | 71.28% |
Japonica Intermediate | 68 | 2.94% | 97.06% |
Group VI/Aromatic | 14 | 92.86% | 7.14% |
Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0128083529 | C->A | LOC_Os01g48940(LOC_Os01g48940.1) | INTRON |