Detailed information of SNP:
|
SNP ID:
sf0128119175(Gbrowse)
Chromosome: chr01 Position: 28119175 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 77.17% | 22.83% |
| All Indica | 788 | 70.56% | 29.44% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 371 | 80.86% | 19.14% |
| Indica II | 208 | 51.92% | 48.08% |
| Indica Intermediate | 209 | 70.81% | 29.19% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128119175 | A->G | LOC_Os01g48980(LOC_Os01g48980.1) | INTRON |