Detailed information of SNP:
|
SNP ID:
sf0128124616(Gbrowse)
Chromosome: chr01 Position: 28124616 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 59.18% | 40.82% |
| All Indica | 798 | 98.87% | 1.13% |
| All Japonica | 496 | 5.65% | 94.35% |
| Aus | 66 | 4.55% | 95.45% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 27.96% | 72.04% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128124616 | C->G | INTERGENIC | None |