Detailed information of SNP:
|
SNP ID:
sf0128138039(Gbrowse)
Chromosome: chr01 Position: 28138039 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1159 | 79.47% | 20.53% |
| All Indica | 558 | 63.08% | 36.92% |
| All Japonica | 487 | 95.07% | 4.93% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 232 | 54.74% | 45.26% |
| Indica II | 176 | 78.41% | 21.59% |
| Indica Intermediate | 150 | 58.00% | 42.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 85 | 74.12% | 25.88% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 80.56% | 19.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128138039 | T->A | LOC_Os01g49000(LOC_Os01g49000.1) | INTRON |