Detailed information of SNP:
|
SNP ID:
sf0128146321(Gbrowse)
Chromosome: chr01 Position: 28146321 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1258 | 50.56% | 49.44% |
| All Indica | 641 | 78.00% | 22.00% |
| All Japonica | 496 | 7.26% | 92.74% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 307 | 90.23% | 9.77% |
| Indica II | 171 | 50.88% | 49.12% |
| Indica Intermediate | 163 | 83.44% | 16.56% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 34.41% | 65.59% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128146321 | T->C | INTERGENIC | None |