Detailed information of SNP:
|
SNP ID:
sf0128146625(Gbrowse)
Chromosome: chr01 Position: 28146625 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 56.54% | 43.46% |
| All Indica | 795 | 39.37% | 60.63% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 28.61% | 71.39% |
| Indica II | 212 | 59.91% | 40.09% |
| Indica Intermediate | 209 | 37.80% | 62.20% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128146625 | T->A | INTERGENIC | None |