Detailed information of SNP:
|
SNP ID:
sf0128332680(Gbrowse)
Chromosome: chr01 Position: 28332680 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 62.65% | 37.35% |
| All Indica | 799 | 49.19% | 50.81% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 38.93% | 61.07% |
| Indica II | 213 | 66.20% | 33.80% |
| Indica Intermediate | 211 | 50.24% | 49.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128332680 | G->A | INTERGENIC | None |