Detailed information of SNP:
|
SNP ID:
sf0128333478(Gbrowse)
Chromosome: chr01 Position: 28333478 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 62.51% | 37.49% |
| All Indica | 799 | 48.94% | 51.06% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 38.40% | 61.60% |
| Indica II | 213 | 66.67% | 33.33% |
| Indica Intermediate | 211 | 49.76% | 50.24% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128333478 | C->T | INTERGENIC | None |