Detailed information of SNP:
|
SNP ID:
sf0128343169(Gbrowse)
Chromosome: chr01 Position: 28343169 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1366 | 90.04% | 9.96% |
| All Indica | 769 | 85.18% | 14.82% |
| All Japonica | 494 | 96.76% | 3.24% |
| Aus | 50 | 96.00% | 4.00% |
| Indica I | 353 | 74.50% | 25.50% |
| Indica II | 208 | 96.15% | 3.85% |
| Indica Intermediate | 208 | 92.31% | 7.69% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 83.52% | 16.48% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128343169 | T->A | INTERGENIC | None |