Detailed information of SNP:
|
SNP ID:
sf0128387648(Gbrowse)
Chromosome: chr01 Position: 28387648 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1163 | 63.54% | 36.46% |
| All Indica | 569 | 33.04% | 66.96% |
| All Japonica | 494 | 94.74% | 5.26% |
| Aus | 56 | 89.29% | 10.71% |
| Indica I | 255 | 30.98% | 69.02% |
| Indica II | 163 | 29.45% | 70.55% |
| Indica Intermediate | 151 | 40.40% | 59.60% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 91 | 86.81% | 13.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 9 | 88.89% | 11.11% |
| Intermediate | 35 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128387648 | T->A | INTERGENIC | None |