Detailed information of SNP:
|
SNP ID:
sf0128394408(Gbrowse)
Chromosome: chr01 Position: 28394408 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 79.99% | 20.01% |
| All Indica | 799 | 74.47% | 25.53% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 74.93% | 25.07% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128394408 | C->T | INTERGENIC | None |