Detailed information of SNP:
|
SNP ID:
sf0128427201(Gbrowse)
Chromosome: chr01 Position: 28427201 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 84.79% | 15.21% |
| All Indica | 794 | 81.11% | 18.89% |
| All Japonica | 497 | 90.34% | 9.66% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 372 | 65.86% | 34.14% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128427201 | G->A | INTERGENIC | None |