Detailed information of SNP:
|
SNP ID:
sf0128443112(Gbrowse)
Chromosome: chr01 Position: 28443112 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 97.56% | 2.44% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 476 | 96.22% | 3.78% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 328 | 99.70% | 0.30% |
| Tropical Japonica | 82 | 86.59% | 13.41% |
| Japonica Intermediate | 66 | 90.91% | 9.09% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128443112 | G->A | INTERGENIC | None |