Detailed information of SNP:
|
SNP ID:
sf0128471424(Gbrowse)
Chromosome: chr01 Position: 28471424 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 62.03% | 37.97% |
| All Indica | 797 | 49.31% | 50.69% |
| All Japonica | 497 | 89.94% | 10.06% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 39.30% | 60.70% |
| Indica II | 213 | 65.73% | 34.27% |
| Indica Intermediate | 210 | 50.48% | 49.52% |
| Temperate Japonica | 335 | 91.94% | 8.06% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128471424 | A->G | INTERGENIC | None |