Detailed information of SNP:
|
SNP ID:
sf0128471834(Gbrowse)
Chromosome: chr01 Position: 28471834 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 74.51% | 25.49% |
| All Indica | 798 | 65.54% | 34.46% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 65 | 0.00% | 100.00% |
| Indica I | 374 | 45.45% | 54.55% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 69.67% | 30.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128471834 | G->A | INTERGENIC | None |