Detailed information of SNP:
|
SNP ID:
sf0128494680(Gbrowse)
Chromosome: chr01 Position: 28494680 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 72.95% | 27.05% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 453 | 21.41% | 78.59% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 309 | 5.83% | 94.17% |
| Tropical Japonica | 92 | 75.00% | 25.00% |
| Japonica Intermediate | 52 | 19.23% | 80.77% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128494680 | A->C | LOC_Os01g49529(LOC_Os01g49529.4) | Non-Synonymous SNP |
| sf0128494680 | A->C | LOC_Os01g49529(LOC_Os01g49529.1) | Non-Synonymous SNP |