Detailed information of SNP:
|
SNP ID:
sf0128495949(Gbrowse)
Chromosome: chr01 Position: 28495949 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 57.86% | 42.14% |
| All Indica | 799 | 34.29% | 65.71% |
| All Japonica | 497 | 89.34% | 10.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 55.20% | 44.80% |
| Indica II | 213 | 1.88% | 98.12% |
| Indica Intermediate | 211 | 29.86% | 70.14% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128495949 | A->G | INTERGENIC | None |