Detailed information of SNP:
|
SNP ID:
sf0128496210(Gbrowse)
Chromosome: chr01 Position: 28496210 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1295 | 69.50% | 30.50% |
| All Indica | 690 | 44.35% | 55.65% |
| All Japonica | 488 | 98.98% | 1.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 354 | 60.45% | 39.55% |
| Indica II | 153 | 11.76% | 88.24% |
| Indica Intermediate | 183 | 40.44% | 59.56% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 87 | 94.25% | 5.75% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 37 | 83.78% | 16.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128496210 | C->T | INTERGENIC | None |