Detailed information of SNP:
|
SNP ID:
sf0128500466(Gbrowse)
Chromosome: chr01 Position: 28500466 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 58.32% | 41.68% |
| All Indica | 798 | 83.83% | 16.17% |
| All Japonica | 497 | 21.13% | 78.87% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 374 | 76.47% | 23.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 9.85% | 90.15% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128500466 | A->C | INTERGENIC | None |