Detailed information of SNP:
|
SNP ID:
sf0128503420(Gbrowse)
Chromosome: chr01 Position: 28503420 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 50.82% | 49.18% |
| All Indica | 778 | 78.28% | 21.72% |
| All Japonica | 497 | 12.68% | 87.32% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 355 | 64.51% | 35.49% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128503420 | C->T | INTERGENIC | None |