Detailed information of SNP:
|
SNP ID:
sf0128509691(Gbrowse)
Chromosome: chr01 Position: 28509691 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 59.84% | 40.16% |
| All Indica | 781 | 37.00% | 63.00% |
| All Japonica | 495 | 90.51% | 9.49% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 369 | 55.01% | 44.99% |
| Indica II | 206 | 11.17% | 88.83% |
| Indica Intermediate | 206 | 30.58% | 69.42% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 50.00% | 50.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128509691 | G->A | INTERGENIC | None |