Detailed information of SNP:
|
SNP ID:
sf0128510361(Gbrowse)
Chromosome: chr01 Position: 28510361 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 56.61% | 43.39% |
| All Indica | 788 | 32.74% | 67.26% |
| All Japonica | 497 | 89.13% | 10.87% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 370 | 52.70% | 47.30% |
| Indica II | 208 | 3.37% | 96.63% |
| Indica Intermediate | 210 | 26.67% | 73.33% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128510361 | T->C | INTERGENIC | None |