Detailed information of SNP:
|
SNP ID:
sf0128517350(Gbrowse)
Chromosome: chr01 Position: 28517350 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 73.49% | 26.51% |
| All Indica | 793 | 66.83% | 33.17% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 66 | 1.52% | 98.48% |
| Indica I | 371 | 45.82% | 54.18% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 71.29% | 28.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128517350 | C->T | INTERGENIC | None |