Detailed information of SNP:
|
SNP ID:
sf0128524941(Gbrowse)
Chromosome: chr01 Position: 28524941 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 70.22% | 29.78% |
| All Indica | 798 | 65.79% | 34.21% |
| All Japonica | 496 | 88.91% | 11.09% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 44.39% | 55.61% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 70.14% | 29.86% |
| Temperate Japonica | 335 | 90.45% | 9.55% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128524941 | A->G | LOC_Os01g49614(LOC_Os01g49614.1) | INTRON |
| sf0128524941 | A->G | LOC_Os01g49614(LOC_Os01g49614.2) | INTRON |
| sf0128524941 | A->G | LOC_Os01g49614(LOC_Os01g49614.3) | INTRON |