Detailed information of SNP:
|
SNP ID:
sf0128526891(Gbrowse)
Chromosome: chr01 Position: 28526891 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 64.63% | 35.37% |
| All Indica | 790 | 44.43% | 55.57% |
| All Japonica | 496 | 91.13% | 8.87% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 370 | 59.73% | 40.27% |
| Indica II | 210 | 25.24% | 74.76% |
| Indica Intermediate | 210 | 36.67% | 63.33% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 54.84% | 45.16% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128526891 | A->T | LOC_Os01g49614(LOC_Os01g49614.1) | INTRON |
| sf0128526891 | A->T | LOC_Os01g49614(LOC_Os01g49614.3) | INTRON |