Detailed information of SNP:
|
SNP ID:
sf0128528509(Gbrowse)
Chromosome: chr01 Position: 28528509 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1383 | 81.49% | 18.51% |
| All Indica | 773 | 70.76% | 29.24% |
| All Japonica | 489 | 95.30% | 4.70% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 83.43% | 16.57% |
| Indica II | 205 | 51.71% | 48.29% |
| Indica Intermediate | 206 | 67.48% | 32.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 86 | 74.42% | 25.58% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128528509 | T->G | LOC_Os01g49614(LOC_Os01g49614.1) | INTRON |
| sf0128528509 | T->G | LOC_Os01g49614(LOC_Os01g49614.3) | INTRON |