Detailed information of SNP:
|
SNP ID:
sf0128528620(Gbrowse)
Chromosome: chr01 Position: 28528620 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 58.73% | 41.27% |
| All Indica | 786 | 43.64% | 56.36% |
| All Japonica | 497 | 87.32% | 12.68% |
| Aus | 60 | 33.33% | 66.67% |
| Indica I | 366 | 28.69% | 71.31% |
| Indica II | 213 | 66.67% | 33.33% |
| Indica Intermediate | 207 | 46.38% | 53.62% |
| Temperate Japonica | 335 | 90.45% | 9.55% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0128528620 | T->C | LOC_Os01g49614(LOC_Os01g49614.1) | INTRON |
| sf0128528620 | T->C | LOC_Os01g49614(LOC_Os01g49614.3) | INTRON |